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samuelklee/sv-pipeline:sl_baf

Manifest digest

sha256:20a0f20f6e1333d95ee0314bf51090c52da0440cf864f94eef090bedd1e0b80f

OS/ARCH

linux/amd64

Compressed size

604.23 MB

Last pushed

about 7 years by samuelklee

Type

Image

Manifest digest

sha256:20a0f20f6e1333d95ee0314bf51090c52da0440cf864f94eef090bedd1e0b80f

Image Layers

Image Layers

1ADD file ... in / 25.82 MB
2/bin/sh -c [ -z "$(apt-get34.32 KB
3/bin/sh -c set -xe &&868 B
4/bin/sh -c mkdir -p /run/systemd164 B
5CMD ["/bin/bash"]0 B
6ENV HOME=/root0 B
7CMD ["bash"]0 B
8COPY multi:be0692c420313ad4ca993f66c2897d97ccc0ef269591e634b92c48f98f78ff08 in /usr/local/bin/ 0 B
9ARG DEBIAN_FRONTEND=noninteractive0 B
10|1 DEBIAN_FRONTEND=noninteractive /bin/sh -c apt-get0 B
1128.73 MB
12ENV HOME=/root0 B
13ARG CLOUD_SDK_VERSION=235.0.00 B
14ARG GCLOUD_SDK_EXTRA_COMPONENTS0 B
15ARG GCLOUD_SDK_TRANSIENT_DEP=curl gpg-agent gnupg0 B
16ARG GCLOUD_SDK_DEPENDENCIES=lsb-release curl gpg-agent0 B
17ARG DEBIAN_FRONTEND=noninteractive0 B
18|4 CLOUD_SDK_VERSION=235.0.0 DEBIAN_FRONTEND=noninteractive GCLOUD_SDK_DEPENDENCIES=lsb-release curl0 B
19COPY file:6c944d6c2645a012aac09e5ba500c2be38aa1537911d89c5ee76820d3f7dbba6 in /opt/ 0 B
20COPY file:9ea9cf1564be558fef7ce618251e3a793445b85214738f27efbf1d0e4b5982ac in /opt/ 0 B
21ARG R_DEP_TRANSIENT=make gpg-agent gnupg0 B
22ARG R_DEPENDENCIES=software-properties-common build-essential make0 B
23ARG R_RELEASE_VERSION=3.5.10 B
24ARG SV_BASE_R_PKGS=optparse BiocManager0 B
25ARG SLIM_R_LIB_CMD=find . 0 B
26ARG DEBIAN_FRONTEND=noninteractive0 B
27|9 CLOUD_SDK_VERSION=235.0.0 DEBIAN_FRONTEND=noninteractive GCLOUD_SDK_DEPENDENCIES=lsb-release curl0 B
28190.21 MB
29ARG SV_PIPE_SHARED_R_PKGS=MASS e10710 B
30|1 SV_PIPE_SHARED_R_PKGS=MASS e1071 /bin/sh -c0 B
31ARG CONDA_DEP_TRANSIENT=make git wget0 B
32ARG CONDA_DEP=software-properties-common zlib1g-dev libbz2-dev0 B
33ARG PYTHON_PKGS=wheel bzip2 cython0 B
34ENV LANG=C.UTF-80 B
35ENV LC_ALL=C.UTF-80 B
36ARG CONDA_INSTALL_DIR=/opt/conda0 B
37ARG CONDA_RELEASE=4.6.140 B
38ARG CONDA_BIN=/opt/conda/bin0 B
39ARG CONDA_CMD=/opt/conda/bin/conda0 B
40ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
41ARG DEBIAN_FRONTEND=noninteractive0 B
42|9 CONDA_BIN=/opt/conda/bin CONDA_CMD=/opt/conda/bin/conda CONDA_DEP=software-properties-common zlib1g-dev0 B
43COPY dir:cc83de9585af095d257f33cd057e5ae9bae53c674656733006aa7fea88595d1d in /opt/sv-pipeline 0 B
44COPY dir:177ea4ed8308332aec2deb97e14e3ef6d863fc988df994bc71086c2639cf3edb in /opt/WGD 0 B
45ENV PATH=/opt/WGD/bin:/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
46COPY dir:538967bd58562f93be7d9c90f988479b00c4c988b58e2f422017cff08f157c3a in /opt/RdTest 0 B
47COPY dir:58bc0eaf45aa5b1d18d0303377edb9e054d80cf83dd11be036998058b1622f71 in /opt/svtk 0 B
48|9 CONDA_BIN=/opt/conda/bin CONDA_CMD=/opt/conda/bin/conda CONDA_DEP=software-properties-common zlib1g-dev0 B
49328.19 MB
50ARG SV_PIPELINE_BIOCONDUCTOR_PKGS=SNPRelate0 B
51|1 SV_PIPELINE_BIOCONDUCTOR_PKGS=SNPRelate /bin/sh -c apt-get0 B
52ARG KING_URL=http://people.virginia.edu/~wc9c/KING/executables/Linux-king215.tar.gz0 B
53ARG PLING2_URL=https://github.com/chrchang/plink-ng/releases/download/2019/plink2_linux_x86_64_20190107.zip0 B
54ARG DEBIAN_FRONTEND=noninteractive0 B
55|4 DEBIAN_FRONTEND=noninteractive KING_URL=http://people.virginia.edu/~wc9c/KING/executables/Linux-king215.tar.gz PLING2_URL=https://github.com/chrchang/plink-ng/releases/download/2019/plink2_linux_x86_64_20190107.zip SV_PIPELINE_BIOCONDUCTOR_PKGS=SNPRelate0 B
56ENV PATH=/opt/:/opt/WGD/bin:/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
5731.23 MB

Command

ADD file:13804c7325ebaad3133476c32ab4fa9676abc0550ebc6fb555283ddee2bfe24a in /