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pennlinc/freesurfer-post:0.2.1

Manifest digest

sha256:698d287385552eb27ede86f290813495ba4b711cc976e817778aed3a1d4167a9

OS/ARCH

linux/amd64

Compressed size

2.28 GB

Last pushed

28 days by matthewcieslak

Type

Image

Manifest digest

sha256:698d287385552eb27ede86f290813495ba4b711cc976e817778aed3a1d4167a9

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=22.040 B
5ADD file ... in / 28.18 MB
6CMD ["/bin/bash"]0 B
7ENV DEBIAN_FRONTEND=noninteractive LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 CPATH=0 B
8RUN /bin/sh -c apt-get update100.34 MB
9COPY /opt/freesurfer /opt/freesurfer # buildkit939.61 MB
10COPY /opt/freesurfer/average/surf /opt/freesurfer/average/surf # buildkit12.52 MB
11COPY /opt/freesurfer/subjects/fsaverage /opt/freesurfer/subjects/fsaverage # buildkit306.03 MB
12ENV OS=Linux FS_OVERRIDE=0 FIX_VERTEX_AREA= FSF_OUTPUT_FORMAT=nii.gz0 B
13ENV SUBJECTS_DIR=/opt/freesurfer/subjects FUNCTIONALS_DIR=/opt/freesurfer/sessions MNI_DIR=/opt/freesurfer/mni LOCAL_DIR=/opt/freesurfer/local0 B
14ENV PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 MNI_PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 PATH=/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
15RUN /bin/sh -c for fs_command32 B
16ENV PATH=/opt/afni-latest:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin AFNI_IMSAVE_WARNINGS=NO AFNI_PLUGINPATH=/opt/afni-latest0 B
17RUN /bin/sh -c useradd -m4.26 KB
18WORKDIR /home/freesurfer-post32 B
19ENV HOME=/home/freesurfer-post LD_LIBRARY_PATH=/usr/lib/x86_64-linux-gnu:0 B
20COPY /app/.pixi/envs/freesurfer-post /app/.pixi/envs/freesurfer-post # buildkit839.36 MB
21ENV PATH=/app/.pixi/envs/freesurfer-post/bin:/opt/afni-latest:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin CPATH=/app/.pixi/envs/freesurfer-post/include: LD_LIBRARY_PATH=/app/.pixi/envs/freesurfer-post/lib:/usr/lib/x86_64-linux-gnu:0 B
22ENV LANG=C.UTF-8 LC_ALL=C.UTF-8 PYTHONNOUSERSITE=1 FSLDIR=/app/.pixi/envs/freesurfer-post0 B
23ENV MKL_NUM_THREADS=1 OMP_NUM_THREADS=10 B
24ENV NEUROMAPS_DATA=/opt/neuromaps-data0 B
25COPY docker/files/fetch_neuromaps_data.py /usr/local/bin/fetch_neuromaps_data.py # buildkit1021 B
26RUN /bin/sh -c mkdir -p63.52 MB
27RUN /bin/sh -c find $HOME2.28 KB
28RUN /bin/sh -c git clone44.05 MB
29ENV IS_DOCKER_8395080871=10 B
30RUN /bin/sh -c ldconfig #4.81 KB
31WORKDIR /tmp32 B
32ENTRYPOINT ["/app/.pixi/envs/freesurfer-post/bin/freesurfer-post"]0 B
33ARG BUILD_DATE=2026-08-19T19:47:53Z0 B
34ARG VCS_REF=cb8dc25f902f200ba59590cc0d7e04dc41fb55130 B
35ARG VERSION=0.2.10 B
36LABEL org.label-schema.build-date=2026-08-19T19:47:53Z org.label-schema.name=freesurfer-post org.label-schema.description=FreeSurfer Post-processing0 B

Command

 ARG RELEASE