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pennlinc/freesurfer-post:0.1.1

Index digest

sha256:4a74ddba93026db3eaa5ddb4d39263aba44d8307a53faee156029d808ef977a1

OS/ARCH

linux/amd64

Compressed size

1.9 GB

Last pushed

about 1 year by matthewcieslak

Type

Image

Manifest digest

sha256:669044fe8877f493435fe11d6d7f60d46546bff2560f691e1e51faa8f0456345

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=22.040 B
5ADD file ... in / 28.18 MB
6CMD ["/bin/bash"]0 B
7ENV DEBIAN_FRONTEND=noninteractive LANG=en_US.UTF-8 LC_ALL=en_US.UTF-80 B
8RUN /bin/sh -c apt-get update99.92 MB
9COPY /opt/freesurfer /opt/freesurfer # buildkit939.59 MB
10ENV OS=Linux FS_OVERRIDE=0 FIX_VERTEX_AREA= FSF_OUTPUT_FORMAT=nii.gz0 B
11ENV SUBJECTS_DIR=/opt/freesurfer/subjects FUNCTIONALS_DIR=/opt/freesurfer/sessions MNI_DIR=/opt/freesurfer/mni LOCAL_DIR=/opt/freesurfer/local0 B
12ENV PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 MNI_PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 PATH=/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
13ENV PATH=/opt/afni-latest:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin AFNI_IMSAVE_WARNINGS=NO AFNI_PLUGINPATH=/opt/afni-latest0 B
14RUN /bin/sh -c useradd -m4.23 KB
15WORKDIR /home/freesurfer-post32 B
16ENV HOME=/home/freesurfer-post LD_LIBRARY_PATH=/usr/lib/x86_64-linux-gnu:0 B
17COPY /bin/micromamba /bin/micromamba # buildkit6.68 MB
18COPY /opt/conda/envs/freesurfer-post /opt/conda/envs/freesurfer-post # buildkit795.76 MB
19ENV MAMBA_ROOT_PREFIX=/opt/conda0 B
20RUN /bin/sh -c micromamba shell3 KB
21ENV PATH=/opt/conda/envs/freesurfer-post/bin:/opt/afni-latest:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin CPATH=/opt/conda/envs/freesurfer-post/include: LD_LIBRARY_PATH=/opt/conda/envs/freesurfer-post/lib:/usr/lib/x86_64-linux-gnu:0 B
22ENV LANG=C.UTF-8 LC_ALL=C.UTF-8 PYTHONNOUSERSITE=1 FSLDIR=/opt/conda/envs/freesurfer-post0 B
23ENV MKL_NUM_THREADS=1 OMP_NUM_THREADS=10 B
24COPY /src/dist/*.whl . # buildkit13.22 KB
25RUN /bin/sh -c pip install34.06 MB
26RUN /bin/sh -c find $HOME16.21 KB
27RUN /bin/sh -c git clone44.05 MB
28ENV IS_DOCKER_8395080871=10 B
29RUN /bin/sh -c ldconfig #4.81 KB
30WORKDIR /tmp32 B
31ENTRYPOINT ["/opt/conda/envs/freesurfer-post/bin/freesurfer-post"]0 B
32ARG BUILD_DATE0 B
33ARG VCS_REF0 B
34ARG VERSION0 B
35LABEL org.label-schema.build-date= org.label-schema.name=freesurfer-post org.label-schema.description=FreeSurfer Post-processing0 B

Command

 ARG RELEASE