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pennlinc/aslprep_build:0.0.6

Machine learning & AI
Data science
Manifest digest

sha256:3d69e83a5581f665610a88db52b48a01eb299c8e12216ddc0f8c1fbf977b54c0

OS/ARCH

linux/amd64

Compressed size

8.58 GB

Last pushed

almost 3 years by tsalo

Type

Image

Manifest digest

sha256:3d69e83a5581f665610a88db52b48a01eb299c8e12216ddc0f8c1fbf977b54c0

Image Layers

Image Layers

1ADD file ... in / 25.47 MB
2CMD ["bash"]0 B
3COPY docker/files/neurodebian.gpg /usr/local/etc/neurodebian.gpg # buildkit3.33 KB
4RUN /bin/sh -c mkdir /AtlasPack99 B
5COPY /AtlasPack/tpl-fsLR_*.dlabel.nii /AtlasPack/ # buildkit2.22 MB
6COPY /AtlasPack/tpl-MNI152NLin6Asym_*.nii.gz /AtlasPack/ # buildkit6.15 MB
7COPY /AtlasPack/atlas-4S*.tsv /AtlasPack/ # buildkit89.14 KB
8COPY /AtlasPack/*.json /AtlasPack/ # buildkit5.42 KB
9RUN /bin/sh -c apt-get update386.23 MB
10ENV OS=Linux FIX_VERTEX_AREA=0 B
11RUN /bin/sh -c curl -sSLO245.53 MB
12ENV PATH=/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin CPATH=/usr/local/miniconda/include: LANG=C.UTF-8 LC_ALL=C.UTF-80 B
13RUN /bin/sh -c conda install247.64 MB
14RUN /bin/sh -c python -c13.78 KB
15RUN /bin/sh -c python -c145.87 MB
16RUN /bin/sh -c curl -fsSL3.97 GB
17ENV FSLDIR=/opt/fsl-6.0.7.1 PATH=/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/fsl-6.0.7.1/bin FSLOUTPUTTYPE=NIFTI_GZ FSLMULTIFILEQUIT=TRUE0 B
18RUN /bin/sh -c curl -sSL3.17 KB
19RUN /bin/sh -c apt-get update120.9 MB
20ENV AFNI_MODELPATH=/usr/lib/afni/models AFNI_IMSAVE_WARNINGS=NO AFNI_TTATLAS_DATASET=/usr/share/afni/atlases AFNI_PLUGINPATH=/usr/lib/afni/plugins0 B
21ENV PATH=/usr/lib/afni/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/fsl-6.0.7.1/bin0 B
22RUN /bin/sh -c curl -sSL2.76 GB
23ENV FSF_OUTPUT_FORMAT=nii.gz FREESURFER_HOME=/opt/freesurfer0 B
24ENV SUBJECTS_DIR=/opt/freesurfer/subjects FUNCTIONALS_DIR=/opt/freesurfer/sessions MNI_DIR=/opt/freesurfer/mni LOCAL_DIR=/opt/freesurfer/local0 B
25ENV PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 MNI_PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 PATH=/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/lib/afni/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/fsl-6.0.7.1/bin0 B
26ENV ANTSPATH=/usr/lib/ants0 B
27RUN /bin/sh -c mkdir -p602.26 MB
28ENV PATH=/usr/lib/ants:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/lib/afni/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/fsl-6.0.7.1/bin0 B
29RUN /bin/sh -c echo "Downloading45.88 MB
30ENV C3DPATH=/opt/c3d/bin PATH=/opt/c3d/bin:/usr/lib/ants:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/lib/afni/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/fsl-6.0.7.1/bin0 B
31RUN /bin/sh -c npm install3.32 MB
32RUN /bin/sh -c npm install31.77 MB
33ENV MKL_NUM_THREADS=1 OMP_NUM_THREADS=10 B
34RUN /bin/sh -c useradd -m4.4 KB
35WORKDIR /home/aslprep32 B
36ENV HOME=/home/aslprep0 B
37RUN /bin/sh -c curl -o25.21 MB
38RUN /bin/sh -c find $HOME2.27 KB
39RUN /bin/sh -c ldconfig #16.52 KB
40WORKDIR /tmp/32 B

Command

ADD file:40290d9a94ae76c35ab1f57178130ce1c5b976e34a91e77472ecf7e945ab64f9 in /