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pennlinc/aslprep_build:0.0.15

Machine learning & AI
Data science
Manifest digest

sha256:35d7ba3cf51ebc88c6c2fb58e23278870ba44d4d903190fc7ff6e2be7fb69500

OS/ARCH

linux/amd64

Compressed size

4.6 GB

Last pushed

10 months by matthewcieslak

Type

Image

Manifest digest

sha256:35d7ba3cf51ebc88c6c2fb58e23278870ba44d4d903190fc7ff6e2be7fb69500

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=22.040 B
5ADD file ... in / 28.18 MB
6CMD ["/bin/bash"]0 B
7ENV DEBIAN_FRONTEND=noninteractive LANG=en_US.UTF-8 LC_ALL=en_US.UTF-80 B
8RUN /bin/sh -c apt-get update99.96 MB
9RUN /bin/sh -c GNUPGHOME=/tmp gpg2.36 KB
10RUN /bin/sh -c apt-get update18.12 MB
11COPY /usr/local/freesurfer /opt/freesurfer # buildkit981.95 MB
12COPY /usr/local/freesurfer/python/scripts/mri_synthseg /opt/freesurfer/bin/mri_synthseg # buildkit26.81 KB
13COPY /usr/local/freesurfer/models /opt/freesurfer/models # buildkit1.71 GB
14COPY /usr/local/freesurfer/python/scripts/mri_synthstrip /opt/freesurfer/bin/mri_synthstrip # buildkit3.26 KB
15RUN /bin/sh -c chmod +x29.71 KB
16COPY /opt/afni-latest /opt/afni-latest # buildkit8.39 MB
17COPY /opt/workbench /opt/workbench # buildkit83.59 MB
18COPY /opt/convert3d/bin/c3d_affine_tool /usr/bin/c3d_affine_tool # buildkit9.13 MB
19RUN /bin/sh -c mkdir /AtlasPack99 B
20COPY /AtlasPack/tpl-fsLR_*.dlabel.nii /AtlasPack/ # buildkit2.22 MB
21COPY /AtlasPack/tpl-MNI152NLin6Asym_*.nii.gz /AtlasPack/ # buildkit6.15 MB
22COPY /AtlasPack/atlas-4S*.tsv /AtlasPack/ # buildkit89.14 KB
23COPY /AtlasPack/*.json /AtlasPack/ # buildkit5.42 KB
24ENV OS=Linux FS_OVERRIDE=0 FIX_VERTEX_AREA= FSF_OUTPUT_FORMAT=nii.gz0 B
25ENV SUBJECTS_DIR=/opt/freesurfer/subjects FUNCTIONALS_DIR=/opt/freesurfer/sessions MNI_DIR=/opt/freesurfer/mni LOCAL_DIR=/opt/freesurfer/local0 B
26ENV PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 MNI_PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 PATH=/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
27ENV PATH=/opt/afni-latest:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin AFNI_IMSAVE_WARNINGS=NO AFNI_PLUGINPATH=/opt/afni-latest0 B
28ENV PATH=/opt/workbench/bin_linux64:/opt/afni-latest:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin LD_LIBRARY_PATH=/opt/workbench/lib_linux64:0 B
29RUN /bin/sh -c useradd -m4.25 KB
30WORKDIR /home/aslprep32 B
31ENV HOME=/home/aslprep LD_LIBRARY_PATH=/usr/lib/x86_64-linux-gnu:/opt/workbench/lib_linux64:0 B
32COPY /bin/micromamba /bin/micromamba # buildkit6.85 MB
33COPY /opt/conda/envs/aslprep /opt/conda/envs/aslprep # buildkit1.49 GB
34ENV MAMBA_ROOT_PREFIX=/opt/conda0 B
35RUN /bin/sh -c micromamba shell2.94 KB
36ENV PATH=/opt/conda/envs/aslprep/bin:/opt/workbench/bin_linux64:/opt/afni-latest:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin CPATH=/opt/conda/envs/aslprep/include: LD_LIBRARY_PATH=/opt/conda/envs/aslprep/lib:/usr/lib/x86_64-linux-gnu:/opt/workbench/lib_linux64:0 B
37COPY scripts/fetch_templates.py fetch_templates.py # buildkit1.33 KB
38RUN /bin/sh -c python fetch_templates.py89.23 MB
39ENV LANG=C.UTF-8 LC_ALL=C.UTF-8 PYTHONNOUSERSITE=1 FSLDIR=/opt/conda/envs/aslprep0 B
40ENV MKL_NUM_THREADS=1 OMP_NUM_THREADS=10 B
41RUN /bin/sh -c curl -L8.97 MB
42RUN /bin/sh -c find $HOME89.21 MB
43ENV IS_DOCKER_8395080871=10 B
44RUN /bin/sh -c ldconfig #5.46 KB
45WORKDIR /tmp32 B
46ARG BUILD_DATE0 B
47ARG VCS_REF0 B
48ARG VERSION0 B
49LABEL org.label-schema.build-date= org.label-schema.name=ASLPrep org.label-schema.description=ASLPrep -0 B

Command

 ARG RELEASE