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pennlinc/aslprep_build:0.0.12

Machine learning & AI
Data science
Manifest digest

sha256:79dbf68f07d8b64d53e12ec6e452c7b1117f680c1d5a4ef1f83448e26957197e

OS/ARCH

linux/amd64

Compressed size

2.77 GB

Last pushed

almost 2 years by matthewcieslak

Type

Image

Manifest digest

sha256:79dbf68f07d8b64d53e12ec6e452c7b1117f680c1d5a4ef1f83448e26957197e

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=22.040 B
5ADD file ... in / 28.18 MB
6CMD ["/bin/bash"]0 B
7ENV DEBIAN_FRONTEND=noninteractive LANG=en_US.UTF-8 LC_ALL=en_US.UTF-80 B
8RUN /bin/sh -c apt-get update97.58 MB
9RUN /bin/sh -c GNUPGHOME=/tmp gpg2.37 KB
10RUN /bin/sh -c apt-get update17.23 MB
11COPY /opt/freesurfer /opt/freesurfer # buildkit939.38 MB
12COPY /opt/afni-latest /opt/afni-latest # buildkit8.41 MB
13COPY /opt/workbench /opt/workbench # buildkit83.59 MB
14COPY /opt/convert3d/bin/c3d_affine_tool /usr/bin/c3d_affine_tool # buildkit9.13 MB
15RUN /bin/sh -c mkdir /AtlasPack99 B
16COPY /AtlasPack/tpl-fsLR_*.dlabel.nii /AtlasPack/ # buildkit2.22 MB
17COPY /AtlasPack/tpl-MNI152NLin6Asym_*.nii.gz /AtlasPack/ # buildkit6.15 MB
18COPY /AtlasPack/atlas-4S*.tsv /AtlasPack/ # buildkit89.14 KB
19COPY /AtlasPack/*.json /AtlasPack/ # buildkit5.42 KB
20ENV OS=Linux FS_OVERRIDE=0 FIX_VERTEX_AREA= FSF_OUTPUT_FORMAT=nii.gz0 B
21ENV SUBJECTS_DIR=/opt/freesurfer/subjects FUNCTIONALS_DIR=/opt/freesurfer/sessions MNI_DIR=/opt/freesurfer/mni LOCAL_DIR=/opt/freesurfer/local0 B
22ENV PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 MNI_PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 PATH=/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
23ENV PATH=/opt/afni-latest:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin AFNI_IMSAVE_WARNINGS=NO AFNI_PLUGINPATH=/opt/afni-latest0 B
24ENV PATH=/opt/workbench/bin_linux64:/opt/afni-latest:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin LD_LIBRARY_PATH=/opt/workbench/lib_linux64:0 B
25RUN /bin/sh -c useradd -m4.25 KB
26WORKDIR /home/aslprep32 B
27ENV HOME=/home/aslprep LD_LIBRARY_PATH=/usr/lib/x86_64-linux-gnu:/opt/workbench/lib_linux64:0 B
28COPY /bin/micromamba /bin/micromamba # buildkit6.35 MB
29COPY /opt/conda/envs/aslprep /opt/conda/envs/aslprep # buildkit1.41 GB
30ENV MAMBA_ROOT_PREFIX=/opt/conda0 B
31RUN /bin/sh -c micromamba shell2.94 KB
32ENV PATH=/opt/conda/envs/aslprep/bin:/opt/workbench/bin_linux64:/opt/afni-latest:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin CPATH=/opt/conda/envs/aslprep/include: LD_LIBRARY_PATH=/opt/conda/envs/aslprep/lib:/usr/lib/x86_64-linux-gnu:/opt/workbench/lib_linux64:0 B
33COPY scripts/fetch_templates.py fetch_templates.py # buildkit1.33 KB
34RUN /bin/sh -c python fetch_templates.py89.19 MB
35ENV LANG=C.UTF-8 LC_ALL=C.UTF-8 PYTHONNOUSERSITE=1 FSLDIR=/opt/conda/envs/aslprep0 B
36ENV MKL_NUM_THREADS=1 OMP_NUM_THREADS=10 B
37RUN /bin/sh -c curl -L8.97 MB
38RUN /bin/sh -c find $HOME89.19 MB
39ENV IS_DOCKER_8395080871=10 B
40RUN /bin/sh -c ldconfig #5.46 KB
41WORKDIR /tmp32 B
42ARG BUILD_DATE0 B
43ARG VCS_REF0 B
44ARG VERSION0 B
45LABEL org.label-schema.build-date= org.label-schema.name=ASLPrep org.label-schema.description=ASLPrep -0 B

Command

 ARG RELEASE