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pennlinc/aslprep:0.5.0

Machine learning & AI
Data science
Manifest digest

sha256:3200b1f8df37896fd0087ca3701471641b5879ce132f36a9637883350c5f4d5f

OS/ARCH

linux/amd64

Compressed size

10.69 GB

Last pushed

about 3 years by tsalo

Type

Image

Manifest digest

sha256:3200b1f8df37896fd0087ca3701471641b5879ce132f36a9637883350c5f4d5f

Image Layers

Image Layers

1ADD file ... in / 25.47 MB
2CMD ["bash"]0 B
3COPY docker/files/neurodebian.gpg /usr/local/etc/neurodebian.gpg # buildkit3.33 KB
4RUN /bin/sh -c apt-get update361.81 MB
5ENV OS=Linux FIX_VERTEX_AREA=0 B
6RUN /bin/sh -c curl -sSLO176.19 MB
7ENV PATH=/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin CPATH=/usr/local/miniconda/include: LANG=C.UTF-8 LC_ALL=C.UTF-80 B
8RUN /bin/sh -c conda install984.09 MB
9RUN /bin/sh -c curl -sSL3.16 KB
10RUN /bin/sh -c apt-get update120.87 MB
11ENV AFNI_MODELPATH=/usr/lib/afni/models AFNI_IMSAVE_WARNINGS=NO AFNI_TTATLAS_DATASET=/usr/share/afni/atlases AFNI_PLUGINPATH=/usr/lib/afni/plugins0 B
12ENV PATH=/usr/lib/afni/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
13RUN /bin/sh -c curl -sSL2.76 GB
14ENV FSF_OUTPUT_FORMAT=nii.gz FREESURFER_HOME=/opt/freesurfer0 B
15ENV SUBJECTS_DIR=/opt/freesurfer/subjects FUNCTIONALS_DIR=/opt/freesurfer/sessions MNI_DIR=/opt/freesurfer/mni LOCAL_DIR=/opt/freesurfer/local0 B
16ENV PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 MNI_PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 PATH=/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/lib/afni/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
17ENV ANTSPATH=/usr/lib/ants0 B
18RUN /bin/sh -c mkdir -p602.26 MB
19ENV PATH=/usr/lib/ants:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/lib/afni/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
20RUN /bin/sh -c echo "Downloading45.88 MB
21ENV C3DPATH=/opt/c3d/bin PATH=/opt/c3d/bin:/usr/lib/ants:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/lib/afni/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
22RUN /bin/sh -c curl -sL29.73 MB
23RUN /bin/sh -c apt-get -y21.66 MB
24RUN /bin/sh -c npm install3.03 MB
25RUN /bin/sh -c npm install32.71 MB
26ENV MKL_NUM_THREADS=1 OMP_NUM_THREADS=10 B
27ENV FSLDIR=/opt/fsl-6.0.5 PATH=/opt/fsl-6.0.5/bin:/opt/c3d/bin:/usr/lib/ants:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/lib/afni/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin FSLOUTPUTTYPE=NIFTI_GZ0 B
28RUN /bin/sh -c echo "Downloading4.86 GB
29RUN /bin/sh -c useradd -m4.4 KB
30WORKDIR /home/aslprep32 B
31ENV HOME=/home/aslprep0 B
32RUN /bin/sh -c python -c18.51 KB
33RUN /bin/sh -c pip install238.39 MB
34RUN /bin/sh -c curl -o25.21 MB
35RUN /bin/sh -c find $HOME3.89 KB
36RUN /bin/sh -c ldconfig #16.52 KB
37WORKDIR /tmp/32 B
38COPY dir:2f9fd62429a2b691b72d92c6e180fd3a84b2289555ca67fa4121e265ee48e6c9 in /src/aslprep 173.48 MB
39ARG VERSION=0.0.10 B
40|1 VERSION=0.5.0 /bin/sh -c echo160.71 MB
41|1 VERSION=0.5.0 /bin/sh -c find147.18 MB
42|1 VERSION=0.5.0 /bin/sh -c ldconfig16.33 KB
43WORKDIR /tmp/0 B
44ENTRYPOINT ["/usr/local/miniconda/bin/aslprep"]0 B
45ARG BUILD_DATE0 B
46ARG VCS_REF0 B
47ARG VERSION0 B
48LABEL org.label-schema.build-date=2023-09-14T15:30:38Z org.label-schema.name=aslprep org.label-schema.description=ASLPrep:0 B

Command

ADD file:40290d9a94ae76c35ab1f57178130ce1c5b976e34a91e77472ecf7e945ab64f9 in /