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ontresearch/medaka:sha3dc8413c2af77a427048b091c7a69b638ba30cfe

Multi-platform
Index digest

sha256:f120ee98922aa3f21dea7a8932558180b1ab42c25448ca09e3b88bc125222b16

OS/ARCH

Compressed size

2.27 GB

Last pushed

about 1 year by epi2melabs

Type

Image

Manifest digest

sha256:82b872de041f09db7e8efaf6480e16d8dbd2e20b262701e07c268f6296e00a6e

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=20.040 B
5ADD file ... in / 27.26 MB
6CMD ["/bin/bash"]0 B
7ENV NVARCH=x86_640 B
8ENV NVIDIA_REQUIRE_CUDA=cuda>=11.2 brand=tesla,driver>=418,driver<419 brand=tesla,driver>=450,driver<4510 B
9ENV NV_CUDA_CUDART_VERSION=11.2.152-10 B
10ENV NV_CUDA_COMPAT_PACKAGE=cuda-compat-11-20 B
11ARG TARGETARCH0 B
12LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B
13RUN |1 TARGETARCH=amd64 /bin/sh -c7.58 MB
14ENV CUDA_VERSION=11.2.20 B
15RUN |1 TARGETARCH=amd64 /bin/sh -c10.53 MB
16RUN |1 TARGETARCH=amd64 /bin/sh -c187 B
17ENV PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
18ENV LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib640 B
19COPY NGC-DL-CONTAINER-LICENSE / # buildkit6.72 KB
20ENV NVIDIA_VISIBLE_DEVICES=all0 B
21ENV NVIDIA_DRIVER_CAPABILITIES=compute,utility0 B
22ENV NV_CUDA_LIB_VERSION=11.2.2-10 B
23ENV NV_NVTX_VERSION=11.2.152-10 B
24ENV NV_LIBNPP_VERSION=11.3.2.152-10 B
25ENV NV_LIBNPP_PACKAGE=libnpp-11-2=11.3.2.152-10 B
26ENV NV_LIBCUSPARSE_VERSION=11.4.1.1152-10 B
27ENV NV_LIBCUBLAS_PACKAGE_NAME=libcublas-11-20 B
28ENV NV_LIBCUBLAS_VERSION=11.4.1.1043-10 B
29ENV NV_LIBCUBLAS_PACKAGE=libcublas-11-2=11.4.1.1043-10 B
30ENV NV_LIBNCCL_PACKAGE_NAME=libnccl20 B
31ENV NV_LIBNCCL_PACKAGE_VERSION=2.8.4-10 B
32ENV NCCL_VERSION=2.8.4-10 B
33ENV NV_LIBNCCL_PACKAGE=libnccl2=2.8.4-1+cuda11.20 B
34ARG TARGETARCH0 B
35LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B
36RUN |1 TARGETARCH=amd64 /bin/sh -c1.02 GB
37RUN |1 TARGETARCH=amd64 /bin/sh -c60.03 KB
38COPY entrypoint.d/ /opt/nvidia/entrypoint.d/ # buildkit1.65 KB
39COPY nvidia_entrypoint.sh /opt/nvidia/ # buildkit1.49 KB
40ENV NVIDIA_PRODUCT_NAME=CUDA0 B
41ENTRYPOINT ["/opt/nvidia/nvidia_entrypoint.sh"]0 B
42ENV NV_CUDNN_VERSION=8.1.1.330 B
43ENV NV_CUDNN_PACKAGE_NAME=libcudnn80 B
44ENV NV_CUDNN_PACKAGE=libcudnn8=8.1.1.33-1+cuda11.20 B
45ARG TARGETARCH0 B
46LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B
47LABEL com.nvidia.cudnn.version=8.1.1.330 B
48RUN |1 TARGETARCH=amd64 /bin/sh -c685.41 MB
49ENV DEBIAN_FRONTEND=noninteractive0 B
50LABEL maintainer=Oxford Nanopore Technologies0 B
51ARG WF_USER=epi2melabs0 B
52ARG WF_UID=10000 B
53ARG WF_GID=1000 B
54ARG ARCH=linux-640 B
55SHELL [/bin/bash -o pipefail -c]0 B
56RUN |4 WF_USER=epi2melabs WF_UID=1000 WF_GID=1001.18 MB
57ENV CONDA_DIR=/home/epi2melabs/conda SHELL=/bin/bash WF_USER=epi2melabs WF_UID=10000 B
58ENV HOME=/home/epi2melabs PATH=/home/epi2melabs/conda/bin:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
59COPY fix-permissions /usr/local/bin/fix-permissions # buildkit677 B
60RUN |4 WF_USER=epi2melabs WF_UID=1000 WF_GID=100676 B
61COPY entrypoint /usr/local/bin/entrypoint.sh # buildkit370 B
62RUN |4 WF_USER=epi2melabs WF_UID=1000 WF_GID=100368 B
63ENTRYPOINT ["/usr/local/bin/entrypoint.sh"]0 B
64RUN |4 WF_USER=epi2melabs WF_UID=1000 WF_GID=1005.67 KB
65USER 10000 B
66WORKDIR /home/epi2melabs32 B
67RUN |4 WF_USER=epi2melabs WF_UID=1000 WF_GID=1005.44 MB
68ENV MAMBA_EXE=/home/epi2melabs/bin/micromamba0 B
69ENV MAMBA_ROOT_PREFIX=/home/epi2melabs/conda0 B
70USER 10000 B
71WORKDIR /home/epi2melabs32 B
72ARG ENVFILE=environment.yaml0 B
73ARG ROOT_INIT_SCRIPT=root_init_script.sh0 B
74ARG BEFORE_SCRIPT=before_script.sh0 B
75ARG POST_INSTALL_SCRIPT=post_install_script.sh0 B
76ARG AFTER_SCRIPT=after_script.sh0 B
77ARG BIN_DIR=bin0 B
78ENV MEDAKA_EXTRA_MODELS_PATH=/models0 B
79USER 00 B
80COPY root_init_script.sh /home/epi2melabs/ # buildkit226 B
81COPY bin/* /usr/local/bin/ # buildkit760 B
82COPY whalefish_info /usr/share/whalefish/info # buildkit253 B
83RUN |6 ENVFILE=environment.yaml ROOT_INIT_SCRIPT=root_init_script.sh BEFORE_SCRIPT=before_script.sh32 B
84USER 10000 B
85COPY before_script.sh /home/epi2melabs/ # buildkit225 B
86COPY post_install_script.sh /home/epi2melabs/ # buildkit230 B
87COPY after_script.sh /home/epi2melabs/ # buildkit207 B
88COPY environment.yaml /home/epi2melabs/environment.yaml # buildkit343 B
89RUN |6 ENVFILE=environment.yaml ROOT_INIT_SCRIPT=root_init_script.sh BEFORE_SCRIPT=before_script.sh548.72 MB
90USER 10000 B
91WORKDIR /home/epi2melabs32 B

Command

 ARG RELEASE