Sign inSign up

nipype/nipypeshop:latest

Manifest digest

sha256:3b833d756b4eb124aa7d1a1af26767436b1123ced1b8ff67d389d17b618fcd6d

OS/ARCH

linux/amd64

Compressed size

7.69 GB

Last pushed

over 9 years by oesteban

Type

Image

Manifest digest

sha256:3b833d756b4eb124aa7d1a1af26767436b1123ced1b8ff67d389d17b618fcd6d

Image Layers

Image Layers

1ADD file ... in / 48.98 MB
2CMD ["/bin/bash"]0 B
3MAINTAINER Jupyter Project <[email protected]>0 B
4USER [root]0 B
5ENV DEBIAN_FRONTEND=noninteractive0 B
6/bin/sh -c REPO=http://cdn-fastly.deb.debian.org &&22.94 MB
7/bin/sh -c echo "en_US.UTF-8 UTF-8"317.29 KB
8/bin/sh -c wget --quiet https://github.com/krallin/tini/releases/download/v0.10.0/tini7.77 KB
9ENV CONDA_DIR=/opt/conda0 B
10ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
11ENV SHELL=/bin/bash0 B
12ENV NB_USER=jovyan0 B
13ENV NB_UID=10000 B
14ENV HOME=/home/jovyan0 B
15ENV LC_ALL=en_US.UTF-80 B
16ENV LANG=en_US.UTF-80 B
17ENV LANGUAGE=en_US.UTF-80 B
18/bin/sh -c useradd -m -s3.73 KB
19USER [jovyan]0 B
20/bin/sh -c mkdir /home/$NB_USER/work &&237 B
21/bin/sh -c cd /tmp &&37.75 MB
22/bin/sh -c conda install --quiet73.4 MB
23USER [root]0 B
24EXPOSE 8888/tcp0 B
25WORKDIR /home/jovyan/work0 B
26ENTRYPOINT ["tini" "--"]0 B
27CMD ["start-notebook.sh"]0 B
28COPY file:4cfcf9820ba75a602dcbf6e5ba1c6082122846cbf35faaf4f00ce59c98698330 in /usr/local/bin/566 B
29COPY file:6d15c30d4b64efca62be7871e8bc761ea231fd18909afac4ca10f1429fe6872d in /usr/local/bin/308 B
30COPY file:645466847c934c1add1678b16957d9cf6d7277b655aac6f2d3b88842dda2b4cf in /usr/local/bin/492 B
31COPY file:8784656ba78be4c5c867ba2b44018e0eec125db9994455b933df02b8de7966a5 in /home/jovyan/.jupyter/772 B
32/bin/sh -c chown -R $NB_USER:users772 B
33USER [jovyan]0 B
34MAINTAINER Satrajit Ghosh <[email protected]>0 B
35USER [root]0 B
36/bin/sh -c apt-get update -qq62.47 MB
37ENV NEURODEBIAN_URL=http://neuro.debian.net/lists/jessie.de-md.full0 B
38/bin/sh -c curl -sSL $NEURODEBIAN_URL77.29 MB
39USER [jovyan]0 B
40/bin/sh -c conda install --quiet625.08 MB
41ENV XDG_CACHE_HOME=/home/jovyan/.cache/0 B
42/bin/sh -c MPLBACKEND=Agg $CONDA_DIR/bin/python -c32.34 KB
43/bin/sh -c pip install --upgrade41.38 MB
44/bin/sh -c pip install --quiet4.73 MB
45USER [root]0 B
46/bin/sh -c apt-get clean &&188 B
47USER [jovyan]0 B
48MAINTAINER Satrajit Ghosh <[email protected]>0 B
49USER [root]0 B
50/bin/sh -c apt-get update -qq212.64 MB
51ENV FSLDIR=/usr/share/fsl/5.0 FSLOUTPUTTYPE=NIFTI_GZ FSLMULTIFILEQUIT=TRUE0 B
52USER [root]0 B
53/bin/sh -c apt-get update -qq57.28 MB
54USER [jovyan]0 B
55WORKDIR /tmp0 B
56/bin/sh -c git clone https://github.com/neurolabusc/dcm2niix.git139.38 KB
57/bin/sh -c curl -sSL https://dl.dropbox.com/s/btep51gtglp7kwh/ants.tgz?dl=0541.27 MB
58ENV ANTSPATH=/opt/ants/ PATH=/opt/ants:/usr/lib/fsl/5.0:/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
59/bin/sh -c mkdir -p /opt/c3d44.81 MB
60ENV C3DPATH=/opt/c3d PATH=/opt/c3d/bin:/opt/ants:/usr/lib/fsl/5.0:/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
61USER [root]0 B
62/bin/sh -c apt-get update -qq264.81 KB
63USER [jovyan]0 B
64WORKDIR /opt0 B
65/bin/sh -c curl -sSLO https://afni.nimh.nih.gov/pub/dist/tgz/linux_openmp_64.tgz1.13 GB
66ENV AFNI_MODELPATH=/opt/afni/ AFNI_IMSAVE_WARNINGS=NO AFNI_TTATLAS_DATASET=/opt/afni0 B
67USER [root]0 B
68/bin/sh -c apt-get update -qq3.7 MB
69USER [jovyan]0 B
70/bin/sh -c conda install --quiet15.77 MB
71WORKDIR /tmp0 B
72/bin/sh -c git clone https://github.com/nipy/mindboggle53.67 MB
73ENV vtk_cpp_tools=/opt/mindboggle/vtk_cpp_tools0 B
74WORKDIR /opt0 B
75/bin/sh -c git clone https://github.com/andersonwinkler/PALM.git1.76 MB
76ENV PATH=/opt/PALM:/opt/afni:/opt/c3d/bin:/opt/ants:/usr/lib/fsl/5.0:/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
77USER [root]0 B
78/bin/sh -c apt-get clean &&0 B
79WORKDIR /home/jovyan/work0 B
80USER [jovyan]0 B
81MAINTAINER Satrajit Ghosh <[email protected]>0 B
82/bin/sh -c curl -sSL https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0/freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz2.41 GB
83ENV FSL_DIR=/usr/share/fsl/5.0 OS=Linux FS_OVERRIDE=00 B
84ENV SUBJECTS_DIR=/opt/freesurfer/subjects FUNCTIONALS_DIR=/opt/freesurfer/sessions MNI_DIR=/opt/freesurfer/mni0 B
85ENV PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 MNI_PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 PATH=/opt/freesurfer/bin:/opt/freesurfer/fsfast/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/opt/PALM:/opt/afni:/opt/c3d/bin:/opt/ants:/usr/lib/fsl/5.0:/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
86USER [root]0 B
87WORKDIR /opt0 B
88/bin/sh -c echo "destinationFolder=/opt/mcr" >1.24 GB
89USER [jovyan]0 B
90/bin/sh -c curl -sSL http://www.fil.ion.ucl.ac.uk/spm/download/restricted/utopia/dev/spm12_latest_Linux_R2017a.zip82.13 MB
91ENV MATLABCMD=/opt/mcr/v92/toolbox/matlab SPMMCRCMD=/opt/spm12/run_spm12.sh /opt/mcr/v92/0 B
92USER [root]0 B
93/bin/sh -c apt-get update -qq3.1 MB
94WORKDIR /home/jovyan/work0 B
95USER [jovyan]0 B
96WORKDIR /home/jovyan/work0 B
97/bin/sh -c conda install -y3.32 MB
98/bin/sh -c git clone https://github.com/nipy/mindboggle11.8 MB
99/bin/sh -c git clone https://github.com/akeshavan/roygbiv1.85 MB
100/bin/sh -c git clone https://github.com/akeshavan/nbpapaya717.63 MB
101/bin/sh -c mkdir /home/jovyan/data_mb &&234.07 MB

Command

ADD file:41ac8d85ee35954bf6c8353d9681a045ba260aa9a96dbbded7bcd6e37ee49bea in /