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ncauldronbroad/fungal_gatk4:gatk_base

Manifest digest

sha256:45160b5dc9d414983dc14cc54e8d836c7fa50df701bdb6e9990fb0db899d4a9c

OS/ARCH

linux/amd64

Compressed size

2.43 GB

Last pushed

over 2 years by ncauldronbroad

Type

Image

Manifest digest

sha256:45160b5dc9d414983dc14cc54e8d836c7fa50df701bdb6e9990fb0db899d4a9c

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=22.040 B
5ADD file ... in / 28.18 MB
6CMD ["/bin/bash"]0 B
7ENV DEBIAN_FRONTEND=noninteractive0 B
8/bin/sh -c apt update &&363.22 MB
9/bin/sh -c java -version131 B
10/bin/sh -c echo "deb [signed-by=/usr/share/keyrings/cloud.google.gpg]49.34 MB
11ENV HOME=/root0 B
12WORKDIR /root0 B
13CMD ["bash"]0 B
14ENV JAVA_LIBRARY_PATH=/usr/lib/jni0 B
15ENV DOWNLOAD_DIR=/downloads0 B
16ENV CONDA_URL=https://repo.anaconda.com/miniconda/Miniconda3-py310_23.10.0-1-Linux-x86_64.sh0 B
17ENV CONDA_SHA256=c7a34df472feb69805b64df6e8db58363c5ccab41cd3b40b07e3e6dfb924359a0 B
18ENV CONDA_PATH=/opt/miniconda0 B
19ENV PATH=/opt/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
20/bin/sh -c mkdir $DOWNLOAD_DIR &&123.27 MB
21/bin/sh -c rm /etc/apt/sources.list.d/google-cloud-sdk.list &&455 B
22WORKDIR /gatk127 B
23/bin/sh -c chmod -R a+rw93 B
24COPY dir:09a895dc0a04195a24fd3ee2985b37acc9fc9e639e456ab58578a375cf71fd2f in . 701.51 MB
25/bin/sh -c ln -s $(146 B
26/bin/sh -c ln -s $(147 B
27/bin/sh -c ln -s $(144 B
28WORKDIR /root0 B
29/bin/sh -c java -jar gatk.jar131 B
30/bin/sh -c mkdir /gatkCloneMountPoint142 B
31/bin/sh -c mkdir /jars127 B
32/bin/sh -c mkdir .gradle153 B
33WORKDIR /gatk0 B
34ENV CI=true0 B
35/bin/sh -c echo "source activate556 B
36WORKDIR /root0 B
37/bin/sh -c cp -r /root/run_unit_tests.sh557 B
38/bin/sh -c cp -r gatk.jar145 B
39ENV CLASSPATH=/gatk/gatk.jar:0 B
40WORKDIR /gatk0 B
41ENV PATH=/opt/miniconda/envs/gatk/bin:/opt/miniconda/bin:/opt/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
42/bin/sh -c conda env create1.07 GB
43CMD ["bash" "--init-file" "/gatk/gatkenv.rc"]0 B
44ENV PATH=/gatk:/opt/miniconda/envs/gatk/bin:/opt/miniconda/bin:/opt/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
45ENV TERM=xterm-256color0 B
46LABEL SAMTOOLS_VER=1.130 B
47LABEL BCFTOOLS_VER=1.130 B
48LABEL BWA_VER=0.7.170 B
49LABEL GATK_VER=4.5.0.00 B
50LABEL [email protected]0 B
51ENV DEBIAN_FRONTEND=noninteractive0 B
52RUN /bin/sh -c apt-get update34.34 MB
53RUN /bin/sh -c cd /opt3.95 MB
54ENV PATH=/opt/bwa:/gatk:/opt/miniconda/envs/gatk/bin:/opt/miniconda/bin:/opt/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
55RUN /bin/sh -c echo 'install.packages(c("ggplot2"),89.11 MB

Command

 ARG RELEASE