mgibio/phlat:1.1_with_index_apptainer_compatible

Index digest

sha256:efa9b843a6d9f54d046a1c2fec83dcc9d2ea15f157b6ae4ae8b9e124bb14f543

OS/ARCH

linux/amd64

Compressed size

7.49 GB

Last pushed

10 months by chrisamiller

Type

Image

Manifest digest

sha256:2d91f1347e9cfbd7a9df8f33fe7278571e21a4606877b6f04586f44fdc9b0d9f

Image Layers

1ADD file ... in / 44.34 MB

2/bin/sh -c set -xe &&857 B

3/bin/sh -c rm -rf /var/lib/apt/lists/*528 B

4/bin/sh -c mkdir -p /run/systemd170 B

5CMD ["/bin/bash"]0 B

6RUN /bin/sh -c apt-get update253.68 MB

7RUN /bin/sh -c pip2 install22.79 MB

8COPY /usr/local/bin/samtools /usr/local/bin/samtools # buildkit317.3 KB

9COPY /usr/local/lib/libhts.so* /usr/local/lib/libtinfow.so* /usr/local/lib/libdeflate.so* /usr/local/lib/libncursesw.so*2.1 MB

10ADD https://github.com/broadinstitute/picard/releases/download/2.18.1/picard.jar ./ # buildkit11.69 MB

11RUN /bin/sh -c mkdir /opt/picard-2.18.111.69 MB

12WORKDIR /usr/32 B

13COPY ./phlat-release bin/phlat-release # buildkit3.56 GB

14RUN /bin/sh -c chmod -R3.56 GB

15COPY run.b38.sh bin/. # buildkit1.79 KB

16ADD https://anaconda.org/bioconda/bowtie2/2.2.4/download/linux-64/bowtie2-2.2.4-py27_1.tar.bz2 /opt/ # buildkit10.1 MB

17RUN /bin/sh -c tar -xvjf10.2 MB

18RUN /bin/sh -c rm -f148 B

19COPY run.b38.sh /usr/bin/run.b38.sh # buildkit1.86 KB

20RUN /bin/sh -c chmod +x1.92 KB

21WORKDIR /tmp32 B

Command

ADD file:11b425d4c08e81a3e0cb2e0345d27cd5fc844dd83f1096af4cc05f635824ff5d in /