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kapsakcj/pangolin:4.1.3-pdata-1.15.1

Manifest digest

sha256:5e604f17cd0a6a35c203e98121068c46943af0c940a0430932a14d0d17e517bf

OS/ARCH

linux/amd64

Compressed size

984.97 MB

Last pushed

almost 4 years by kapsakcj

Type

Image

Manifest digest

sha256:5e604f17cd0a6a35c203e98121068c46943af0c940a0430932a14d0d17e517bf

Image Layers

Image Layers

1ADD file ... in / 29.96 MB
2CMD ["bash"]0 B
3ENV LANG=C.UTF-8 LC_ALL=C.UTF-80 B
4ENV ENV_NAME=base0 B
5ENV MAMBA_ROOT_PREFIX=/opt/conda0 B
6ENV MAMBA_EXE=/bin/micromamba0 B
7COPY /etc/ssl/certs/ca-certificates.crt /etc/ssl/certs/ca-certificates.crt # buildkit112.53 KB
8COPY /tmp/bin/micromamba /bin/micromamba # buildkit6.38 MB
9ARG MAMBA_USER=mambauser0 B
10ARG MAMBA_USER_ID=10000 B
11ARG MAMBA_USER_GID=10000 B
12ENV MAMBA_USER=mambauser0 B
13COPY _dockerfile_initialize_user_accounts.sh /usr/local/bin/_dockerfile_initialize_user_accounts.sh # buildkit439 B
14COPY _dockerfile_setup_root_prefix.sh /usr/local/bin/_dockerfile_setup_root_prefix.sh # buildkit288 B
15RUN |3 MAMBA_USER=mambauser MAMBA_USER_ID=1000 MAMBA_USER_GID=10004.49 KB
16USER mambauser0 B
17WORKDIR /tmp32 B
18COPY _entrypoint.sh /usr/local/bin/_entrypoint.sh # buildkit688 B
19COPY _activate_current_env.sh /usr/local/bin/_activate_current_env.sh # buildkit646 B
20ENTRYPOINT ["/usr/local/bin/_entrypoint.sh"]0 B
21CMD ["/bin/bash"]0 B
22COPY _dockerfile_shell.sh /usr/local/bin/_dockerfile_shell.sh # buildkit349 B
23SHELL [/usr/local/bin/_dockerfile_shell.sh]0 B
24/usr/local/bin/_dockerfile_shell.sh #(nop) USER root0 B
25/usr/local/bin/_dockerfile_shell.sh #(nop) WORKDIR /0 B
26/usr/local/bin/_dockerfile_shell.sh #(nop) ARG PANGOLIN_VER=v4.1.30 B
27/usr/local/bin/_dockerfile_shell.sh #(nop) ARG PANGOLIN_DATA_VER=v1.15.10 B
28/usr/local/bin/_dockerfile_shell.sh #(nop) ARG SCORPIO_VER=v0.3.170 B
29/usr/local/bin/_dockerfile_shell.sh #(nop) ARG CONSTELLATIONS_VER=v0.1.100 B
30/usr/local/bin/_dockerfile_shell.sh #(nop) ARG USHER_VER=0.5.60 B
31/usr/local/bin/_dockerfile_shell.sh #(nop) LABEL base.image=mambaorg/micromamba:0.27.00 B
32/usr/local/bin/_dockerfile_shell.sh #(nop) LABEL dockerfile.version=10 B
33/usr/local/bin/_dockerfile_shell.sh #(nop) LABEL software=pangolin0 B
34/usr/local/bin/_dockerfile_shell.sh #(nop) LABEL software.version=v4.1.30 B
35/usr/local/bin/_dockerfile_shell.sh #(nop) LABEL description=Conda0 B
36/usr/local/bin/_dockerfile_shell.sh #(nop) LABEL website=https://github.com/cov-lineages/pangolin0 B
37/usr/local/bin/_dockerfile_shell.sh #(nop) LABEL license=GNU0 B
38/usr/local/bin/_dockerfile_shell.sh #(nop) LABEL license.url=https://github.com/cov-lineages/pangolin/blob/master/LICENSE.txt0 B
39/usr/local/bin/_dockerfile_shell.sh #(nop) LABEL maintainer1=Curtis0 B
40/usr/local/bin/_dockerfile_shell.sh #(nop) LABEL [email protected]0 B
41|5 CONSTELLATIONS_VER=v0.1.10 PANGOLIN_DATA_VER=v1.15.1 PANGOLIN_VER=v4.1.3 SCORPIO_VER=v0.3.1725.28 MB
42|5 CONSTELLATIONS_VER=v0.1.10 PANGOLIN_DATA_VER=v1.15.1 PANGOLIN_VER=v4.1.3 SCORPIO_VER=v0.3.17204.14 KB
43/usr/local/bin/_dockerfile_shell.sh #(nop) ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
44|5 CONSTELLATIONS_VER=v0.1.10 PANGOLIN_DATA_VER=v1.15.1 PANGOLIN_VER=v4.1.3 SCORPIO_VER=v0.3.17517.08 MB
45/usr/local/bin/_dockerfile_shell.sh #(nop) ENV ENV_NAME=pangolin0 B
46/usr/local/bin/_dockerfile_shell.sh #(nop) ARG MAMBA_DOCKERFILE_ACTIVATE=10 B
47/usr/local/bin/_dockerfile_shell.sh #(nop) WORKDIR /pangolin0 B
48|6 CONSTELLATIONS_VER=v0.1.10 MAMBA_DOCKERFILE_ACTIVATE=1 PANGOLIN_DATA_VER=v1.15.1 PANGOLIN_VER=v4.1.3385.01 MB
49/usr/local/bin/_dockerfile_shell.sh #(nop) WORKDIR /data0 B
50/usr/local/bin/_dockerfile_shell.sh #(nop) ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/envs/pangolin/bin/0 B
51/usr/local/bin/_dockerfile_shell.sh #(nop) ENV ENV_NAME=pangolin0 B
52/usr/local/bin/_dockerfile_shell.sh #(nop) ARG MAMBA_DOCKERFILE_ACTIVATE=10 B
53|1 MAMBA_DOCKERFILE_ACTIVATE=1 /usr/local/bin/_dockerfile_shell.sh pangolin /pangolin/pangolin/test/test_seqs.fasta724 B
54|1 MAMBA_DOCKERFILE_ACTIVATE=1 /usr/local/bin/_dockerfile_shell.sh pangolin --use-assignment-cache693 B
55/usr/local/bin/_dockerfile_shell.sh #(nop) ADD 4813e3f2acfe2c2376df24837317df59fd9f938d5b83e39115c4c7c26a3c7a7d in8.95 KB
56|1 MAMBA_DOCKERFILE_ACTIVATE=1 /usr/local/bin/_dockerfile_shell.sh pangolin /test-data/SRR13957123.consensus.fa475 B
57|1 MAMBA_DOCKERFILE_ACTIVATE=1 /usr/local/bin/_dockerfile_shell.sh apt-get update13.61 MB
58|1 MAMBA_DOCKERFILE_ACTIVATE=1 /usr/local/bin/_dockerfile_shell.sh wget https://ftp.ncbi.nlm.nih.gov/pub/datasets/command-line/LATEST/linux-amd64/datasets7.28 MB
59|1 MAMBA_DOCKERFILE_ACTIVATE=1 /usr/local/bin/_dockerfile_shell.sh datasets download32.9 KB

Command

ADD file:b78b777208be08edd8f297035cdfbacddb45170ad778fd643c792ee045187e39 in /