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genepattern/genepattern-notebook:20.01

Manifest digest

sha256:41046945f786401ba045611920aebe30761a8d69d5a7004483894b8449975666

OS/ARCH

linux/amd64

Compressed size

6.06 GB

Last pushed

over 6 years by tmtabor

Type

Image

Manifest digest

sha256:41046945f786401ba045611920aebe30761a8d69d5a7004483894b8449975666

Image Layers

Image Layers

1ADD file ... in / 25.45 MB
2/bin/sh -c [ -z "$(apt-get34.52 KB
3/bin/sh -c set -xe &&849 B
4/bin/sh -c mkdir -p /run/systemd162 B
5CMD ["/bin/bash"]0 B
6LABEL maintainer=Jupyter Project <[email protected]>0 B
7ARG NB_USER=jovyan0 B
8ARG NB_UID=10000 B
9ARG NB_GID=1000 B
10USER root0 B
11ENV DEBIAN_FRONTEND=noninteractive0 B
12|3 NB_GID=100 NB_UID=1000 NB_USER=jovyan /bin/sh10.51 MB
13|3 NB_GID=100 NB_UID=1000 NB_USER=jovyan /bin/sh414.37 KB
14ENV CONDA_DIR=/opt/conda SHELL=/bin/bash NB_USER=jovyan0 B
15ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin HOME=/home/jovyan0 B
16ADD file ... in /usr/local/bin/fix-permissions 666 B
17/bin/sh -c sed -i 's/^#force_color_prompt=yes/force_color_prompt=yes/'1.85 KB
18/bin/sh -c echo "auth requisite5.85 KB
19USER 10000 B
20WORKDIR /home/jovyan0 B
21/bin/sh -c mkdir /home/$NB_USER/work &&148 B
22ENV MINICONDA_VERSION=4.6.14 CONDA_VERSION=4.7.100 B
23/bin/sh -c cd /tmp &&90.25 MB
24/bin/sh -c conda install --quiet11.18 KB
25/bin/sh -c conda install --quiet87.76 MB
26EXPOSE 88880 B
27ENTRYPOINT ["tini" "-g" "--"]0 B
28CMD ["start-notebook.sh"]0 B
29COPY file:be20131ba97563898c30998c19104b0d58d61a982ea5555a2002b0c2f0b49668 in /usr/local/bin/ 2.11 KB
30COPY file:b2c3f5a0f1eb5ccb09652a170a2345d2c65ff31f325fb29250fc500957117659 in /usr/local/bin/ 486 B
31COPY file:f18466c43c93e954cf68e631cbbe61aba2ec666f0dd9a113f97404789f539808 in /usr/local/bin/ 690 B
32COPY file:cd827a3a9853bdea9decd0b6548b957cbe9821532361805d99dee359cfbbd1c0 in /etc/jupyter/ 1005 B
33USER root0 B
34/bin/sh -c fix-permissions /etc/jupyter/1015 B
35USER 10000 B
36LABEL maintainer=Jupyter Project <[email protected]>0 B
37USER root0 B
38/bin/sh -c apt-get update &&773.93 MB
39USER 10000 B
40LABEL maintainer=Jupyter Project <[email protected]>0 B
41USER root0 B
42/bin/sh -c apt-get update &&66.77 MB
43USER 10000 B
44/bin/sh -c conda install --quiet201.07 MB
45/bin/sh -c cd /tmp &&583.08 KB
46ENV XDG_CACHE_HOME=/home/jovyan/.cache/0 B
47/bin/sh -c MPLBACKEND=Agg python -c4.36 KB
48USER 10000 B
49MAINTAINER Thorin Tabor <[email protected]>0 B
50EXPOSE 88880 B
51USER root0 B
52/bin/sh -c apt-get update &&313.45 MB
53USER root0 B
54/bin/sh -c curl -fsSL https://download.docker.com/linux/ubuntu/gpg116.07 MB
55/bin/sh -c wget https://raw.githubusercontent.com/jpetazzo/dind/master/wrapdocker --output-document=/usr/local/bin/wrapdocker2.12 KB
56/bin/sh -c gpasswd -a $NB_USER671 B
57USER root0 B
58/bin/sh -c apt-key adv --keyserver96.43 MB
59ENV OLD_PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
60ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
61/bin/sh -c chmod 777 /opt100 B
62USER jovyan0 B
63/bin/sh -c mkdir /opt/r-tmp &&172.95 MB
64/bin/sh -c printf 'options(install.packages.compile.from.source =317 B
65/bin/sh -c /opt/R3.6/bin/Rscript -e "install.packages('openssl')"29.79 MB
66USER root0 B
67ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
68/bin/sh -c chmod 755 /opt136 B
69USER root0 B
70/bin/sh -c sudo apt-get install250.91 MB
71/bin/sh -c wget https://downloads.globus.org/globus-connect-personal/linux/stable/globusconnectpersonal-latest.tgz -O27.36 MB
72/bin/sh -c echo '20.01, Updating0 B
73USER jovyan0 B
74COPY multi:45db04b134fb3dfff9a162cfbdc5b91dd76d8138c9c2c76e906802de8b494a7d in /opt/conda/lib/python3.7/site-packages/notebook/static/base/images/ 5.84 KB
75COPY multi:273bbf1a8816e83688d68d78007b33409cf76aea47e4743e65ae79d14c7bae1b in /opt/conda/lib/python3.7/site-packages/notebook/static/custom/ 147.29 KB
76USER root0 B
77/bin/sh -c pip install -v3.29 MB
78/bin/sh -c jupyter nbextension enable251 B
79/bin/sh -c git clone https://github.com/genepattern/notebook-repository-frontend.git55.65 KB
80/bin/sh -c git clone https://github.com/genepattern/notebook-tour.git228.69 KB
81/bin/sh -c mkdir /opt/conda/share/jupyter/nbextensions/collapsible_headings &&10.34 KB
82/bin/sh -c mkdir /opt/conda/share/jupyter/nbextensions/toc2 &&12.71 KB
83/bin/sh -c pip install -v636.2 KB
84/bin/sh -c pip install -v2.48 MB
85USER jovyan0 B
86/bin/sh -c conda create -y1.54 GB
87/bin/sh -c /bin/bash -c "source531.11 MB
88/bin/sh -c /bin/bash -c "source36.52 MB
89/bin/sh -c /bin/bash -c "source451.54 MB
90/bin/sh -c echo "/home/jovyan/.local/lib/python3.6/site-packages" >306 B
91USER jovyan0 B
92/bin/sh -c conda create -y1.15 GB
93/bin/sh -c /bin/bash -c "source31.02 MB
94/bin/sh -c /bin/bash -c "source13.08 MB
95/bin/sh -c /bin/bash -c "source13.74 MB
96/bin/sh -c /bin/bash -c "source103.72 MB
97/bin/sh -c /bin/bash -c "source775.43 KB
98/bin/sh -c echo "/home/jovyan/.local/lib/python3.7/site-packages" >302 B
99USER root0 B
100/bin/sh -c /bin/bash -c "source17.38 KB
101/bin/sh -c rm -r /opt/conda/share/jupyter/kernels/python31.18 KB
102USER root0 B
103/bin/sh -c rm -r work235 B
104USER jovyan0 B
105ENV TERM=xterm0 B

Command

ADD file:4e6b5d9ca371eb881c581574b8dc4f5391eff2872db364af0f8d9804e4890098 in /