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genepattern/amplicon-architect:v3.12.0

Manifest digest

sha256:eea531b5868dd45b77e69a101af27aa0ad9d64c5898a493c1a6160c0561848c1

OS/ARCH

linux/amd64

Compressed size

760.44 MB

Last pushed

about 1 year by genepatterndev

Type

Image

Manifest digest

sha256:eea531b5868dd45b77e69a101af27aa0ad9d64c5898a493c1a6160c0561848c1

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=20.040 B
5ADD file ... in / 26.23 MB
6CMD ["/bin/bash"]0 B
7ENV DEBIAN_FRONTEND=noninteractive0 B
8WORKDIR /home/32 B
9RUN /bin/sh -c mkdir -p151 B
10COPY requirements/* /home/requirements/ # buildkit311 B
11RUN /bin/sh -c mkdir -p148 B
12RUN /bin/sh -c echo "ttf-mscorefonts-installer259.26 KB
13RUN /bin/sh -c apt-get update37.9 MB
14RUN /bin/sh -c apt-get install125.87 MB
15RUN /bin/sh -c fc-cache -f19.28 KB
16RUN /bin/sh -c ln -s151 B
17RUN /bin/sh -c python --version32 B
18RUN /bin/sh -c apt-get install3.5 MB
19RUN /bin/sh -c pip3 install4.78 MB
20RUN /bin/sh -c pip3 install414.61 MB
21RUN /bin/sh -c apt-get install48.98 MB
22RUN /bin/sh -c Rscript -e493.05 KB
23RUN /bin/sh -c Rscript -e463.92 KB
24RUN /bin/sh -c cnvkit.py version2.31 KB
25RUN /bin/sh -c mkdir -p143 B
26RUN /bin/sh -c mkdir -p146 B
27RUN /bin/sh -c mkdir -p146 B
28RUN /bin/sh -c mkdir -p149 B
29COPY run_paa_script.sh /home/ # buildkit718 B
30RUN /bin/sh -c echo export1.55 KB
31RUN /bin/sh -c echo export1.57 KB
32RUN /bin/sh -c echo export1.6 KB
33RUN /bin/sh -c echo export1.62 KB
34ADD https://github.com/AmpliconSuite/AmpliconArchitect/archive/master.zip /home/programs # buildkit111.39 KB
35RUN /bin/sh -c cd /home/programs101.65 KB
36ADD https://github.com/AmpliconSuite/AmpliconClassifier/archive/main.zip /home/programs # buildkit106 KB
37RUN /bin/sh -c cd /home/programs103.34 KB
38ADD https://github.com/AmpliconSuite/AmpliconSuite-pipeline/archive/master.zip /home/programs # buildkit5.66 MB
39RUN /bin/sh -c cd /home/programs5.65 MB
40ADD https://github.com/parklab/NGSCheckMate/archive/master.zip /home/programs # buildkit18.79 MB
41RUN /bin/sh -c cd /home/programs20.66 MB
42RUN /bin/sh -c echo export1.64 KB
43RUN /bin/sh -c cp /home/programs/AmpliconSuite-pipeline-master/docker/paa_default_ncm.conf276 B
44RUN /bin/sh -c cp `which313 B
45ARG set_uid0 B
46ARG set_gid0 B
47RUN |2 set_uid= set_gid= /bin/sh32 B
48RUN |2 set_uid= set_gid= /bin/sh24.15 KB
49RUN |2 set_uid= set_gid= /bin/sh94 B
50USER aa_user0 B
51WORKDIR /home32 B
52USER root0 B
53RUN /bin/sh -c mkdir -p114 B
54RUN /bin/sh -c mkdir -p140 B
55COPY src/run_aa.py /opt/genepatt # buildkit3.92 KB
56COPY src/download_ref.sh /opt/genepatt # buildkit1.01 KB
57COPY src/sample_metadata_skeleton.json /opt/genepatt # buildkit241 B
58RUN /bin/sh -c mkdir -p153 B
59RUN /bin/sh -c chmod -R4.8 KB
60RUN /bin/sh -c chmod -R149 B
61RUN /bin/sh -c chmod -R45.41 MB
62RUN /bin/sh -c chmod -R2.3 KB
63RUN /bin/sh -c apt-get update738.65 KB

Command

 ARG RELEASE