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filo/fmripreptest:take2

Manifest digest

sha256:edeec46c0035fd454b86d6f7d1e836967ddaf68bb9c443b941b9934a5c44acdb

OS/ARCH

linux/amd64

Compressed size

4.21 GB

Last pushed

about 9 years by filo

Type

Image

Manifest digest

sha256:edeec46c0035fd454b86d6f7d1e836967ddaf68bb9c443b941b9934a5c44acdb

Image Layers

Image Layers

1ADD file ... in / 47.89 MB
2/bin/sh -c set -xe &&822 B
3/bin/sh -c rm -rf /var/lib/apt/lists/*514 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'681 B
5/bin/sh -c mkdir -p /run/systemd163 B
6CMD ["/bin/bash"]0 B
7COPY file:41a7480fecc5f5aec6c7f8e8fd76129382920ad490e52f8a56aba935ae62b1e4 in /root/.neurodebian.gpg 3.29 KB
8/bin/sh -c apt-get update &&139.32 MB
9/bin/sh -c curl -sSL https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0/freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz2.6 GB
10ENV FSL_DIR=/usr/share/fsl/5.0 OS=Linux FS_OVERRIDE=00 B
11ENV SUBJECTS_DIR=/opt/freesurfer/subjects FUNCTIONALS_DIR=/opt/freesurfer/sessions MNI_DIR=/opt/freesurfer/mni0 B
12ENV PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 MNI_PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 PATH=/opt/freesurfer/bin:/opt/freesurfer/fsfast/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
13/bin/sh -c echo "cHJpbnRmICJrcnp5c3p0b2YuZ29yZ29sZXdza2lAZ21haWwuY29tXG41MTcyXG4gKkN2dW12RVYzelRmZ1xuRlM1Si8yYzFhZ2c0RVxuIiA+IC9vcHQvZnJlZXN1cmZlci9saWNlbnNlLnR4dAo=" |243 B
14/bin/sh -c apt-get update &&169.52 MB
15ENV FSLDIR=/usr/share/fsl/5.0 FSLOUTPUTTYPE=NIFTI_GZ FSLMULTIFILEQUIT=TRUE0 B
16ENV PATH=/usr/lib/fsl/5.0:/usr/lib/afni/bin:/opt/freesurfer/bin:/opt/freesurfer/fsfast/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
17ENV ANTSPATH=/usr/lib/ants0 B
18/bin/sh -c mkdir -p $ANTSPATH504.27 MB
19ENV PATH=/usr/lib/ants:/usr/lib/fsl/5.0:/usr/lib/afni/bin:/opt/freesurfer/bin:/opt/freesurfer/fsfast/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
20/bin/sh -c mkdir -p /opt/c3d45.88 MB
21ENV C3DPATH=/opt/c3d/0 B
22ENV PATH=/opt/c3d//bin:/usr/lib/ants:/usr/lib/fsl/5.0:/usr/lib/afni/bin:/opt/freesurfer/bin:/opt/freesurfer/fsfast/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
23/bin/sh -c curl -sSLO "http://downloads.webmproject.org/releases/webp/libwebp-0.5.2-linux-x86-64.tar.gz"4.23 MB
24/bin/sh -c curl -sL https://deb.nodesource.com/setup_7.x2.23 MB
25/bin/sh -c apt-get install -y16.55 MB
26/bin/sh -c npm install -g1.43 MB
27/bin/sh -c mkdir -p /opt/ICA-AROMA180.52 KB
28ENV PATH=/opt/ICA-AROMA:/opt/c3d//bin:/usr/lib/ants:/usr/lib/fsl/5.0:/usr/lib/afni/bin:/opt/freesurfer/bin:/opt/freesurfer/fsfast/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
29/bin/sh -c curl -sSLO https://repo.continuum.io/miniconda/Miniconda3-4.3.21-Linux-x86_64.sh38.85 MB
30ENV PATH=/usr/local/miniconda/bin:/opt/ICA-AROMA:/opt/c3d//bin:/usr/lib/ants:/usr/lib/fsl/5.0:/usr/lib/afni/bin:/opt/freesurfer/bin:/opt/freesurfer/fsfast/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin LANG=C.UTF-8 LC_ALL=C.UTF-80 B
31/bin/sh -c conda install -y360.26 MB
32/bin/sh -c python -c "from7.06 KB
33/bin/sh -c apt-get update &&18.74 MB
34ENV MKL_NUM_THREADS=1 OMP_NUM_THREADS=10 B
35WORKDIR /root/0 B
36ADD file ... in requirements.txt 164 B
37/bin/sh -c pip install -r19.27 MB
38COPY dir:bfe5e7dd6b099c20f1cfc63f7b5fc639a7aba9bdc8f91bca5fdb3f1e445f6c8f in /root/src/fmriprep 18.88 MB
39/bin/sh -c cd /root/src/fmriprep &&35.99 MB
40/bin/sh -c mkdir /niworkflows_data105 B
41ENV CRN_SHARED_DATA=/niworkflows_data0 B
42/bin/sh -c python -c 'from223.76 MB
43/bin/sh -c ldconfig11.44 KB
44/bin/sh -c /usr/local/miniconda/bin/fmriprep --help151 B
45WORKDIR /root/src/fmriprep0 B
46ENTRYPOINT ["/usr/local/miniconda/bin/fmriprep"]0 B
47ARG BUILD_DATE0 B
48ARG VCS_REF0 B
49ARG VERSION0 B
50LABEL org.label-schema.build-date= org.label-schema.name=FMRIPREP org.label-schema.description=FMRIPREP0 B

Command

ADD file:7529d28035b43a2281b9ba1d3cf6bde4f0d9517693e9412328761d51c24091b4 in /