ctomlins/pacbio_bam_stats:latest

Multi-platform

Index digest

sha256:f9e0d01b77ceb517c74f2518caedf7c865c97210bf23c210deb698cbc770631a

OS/ARCH

Compressed size

296.06 MB

Last pushed

8 months by ctomlins

Type

Image

Manifest digest

sha256:51a4526791b259637c870f70d124b818ff2104c5d4c150d446dea7b3467883b6

Image Layers

1ARG RELEASE0 B

2ARG LAUNCHPAD_BUILD_ARCH0 B

3LABEL org.opencontainers.image.ref.name=ubuntu0 B

4LABEL org.opencontainers.image.version=20.040 B

5ADD file ... in / 26.24 MB

6CMD ["/bin/bash"]0 B

7LABEL maintainer=Chad Tomlinson <[email protected]> description=Ubuntu0 B

8ENV DEBIAN_FRONTEND=noninteractive LC_ALL=C.UTF-8 LANG=C.UTF-80 B

9ARG HTSLIB_VER=1.230 B

10ARG SAMTOOLS_VER=1.230 B

11ARG BCFTOOLS_VER=1.230 B

12ARG HTSLIB_URL=https://github.com/samtools/htslib/releases/download/1.23/htslib-1.23.tar.bz20 B

13ARG SAMTOOLS_URL=https://github.com/samtools/samtools/releases/download/1.23/samtools-1.23.tar.bz20 B

14ARG BCFTOOLS_URL=https://github.com/samtools/bcftools/releases/download/1.23/bcftools-1.23.tar.bz20 B

15RUN |6 HTSLIB_VER=1.23 SAMTOOLS_VER=1.23 BCFTOOLS_VER=1.23121.93 MB

16WORKDIR /tmp/build119 B

17RUN |6 HTSLIB_VER=1.23 SAMTOOLS_VER=1.23 BCFTOOLS_VER=1.2393.62 MB

18RUN |6 HTSLIB_VER=1.23 SAMTOOLS_VER=1.23 BCFTOOLS_VER=1.2326.72 MB

19RUN |6 HTSLIB_VER=1.23 SAMTOOLS_VER=1.23 BCFTOOLS_VER=1.2327.54 MB

20RUN |6 HTSLIB_VER=1.23 SAMTOOLS_VER=1.23 BCFTOOLS_VER=1.235.01 KB

21RUN |6 HTSLIB_VER=1.23 SAMTOOLS_VER=1.23 BCFTOOLS_VER=1.2332 B

22WORKDIR /work94 B

23COPY cramify_one.sh /usr/local/bin/cramify_one.sh # buildkit2.3 KB

24COPY run_one_hifi_bam_metrics.sh /usr/local/bin/run_one_hifi_bam_metrics.sh # buildkit1.69 KB

25COPY reduce_hifi_platform_metrics.sh /usr/local/bin/reduce_hifi_platform_metrics.sh # buildkit1.63 KB

26RUN |6 HTSLIB_VER=1.23 SAMTOOLS_VER=1.23 BCFTOOLS_VER=1.231.68 KB

27ENV UMASK=0002 CRAM_VERSION=3.1 CRAM_CODEC=zlib CRAM_LEVEL=60 B

28CMD ["/bin/bash"]0 B

Command

 ARG RELEASE