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chambm/omicron-cfncluster:release_18.09

Manifest digest

sha256:8b6fecfc959c123ca5545f187f72b9375345110294eb8ad19f3265fe98035aa0

OS/ARCH

linux/amd64

Compressed size

3.75 GB

Last pushed

over 7 years by chambm

Type

Image

Manifest digest

sha256:8b6fecfc959c123ca5545f187f72b9375345110294eb8ad19f3265fe98035aa0

Image Layers

Image Layers

1ADD file ... in / 69.68 MB
2/bin/sh -c set -xe &&70.95 KB
3/bin/sh -c rm -rf /var/lib/apt/lists/*630 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'853 B
5/bin/sh -c mkdir -p /run/systemd163 B
6CMD ["/bin/bash"]0 B
7MAINTAINER Björn A. Grüning,0 B
8ENV DEBIAN_FRONTEND=noninteractive0 B
9/bin/sh -c apt-get -qq update183.22 MB
10MAINTAINER Björn A. Grüning,0 B
11ARG GALAXY_RELEASE0 B
12ARG GALAXY_REPO0 B
13ENV GALAXY_RELEASE=release_18.09 GALAXY_REPO=https://github.com/galaxyproject/galaxy GALAXY_ROOT=/galaxy-central0 B
14ENV GALAXY_CONFIG_FILE=/etc/galaxy/galaxy.yml GALAXY_CONFIG_JOB_CONFIG_FILE=/etc/galaxy/job_conf.xml GALAXY_CONFIG_JOB_METRICS_CONFIG_FILE=/etc/galaxy/job_metrics_conf.xml0 B
15/bin/sh -c locale-gen en_US.UTF-8 &&831.2 KB
16/bin/sh -c groupadd -r postgres2.08 KB
17/bin/sh -c echo "force-unsafe-io" >291.26 MB
18/bin/sh -c groupadd -r $GALAXY_USER21.68 KB
19ADD file ... in /home/galaxy/.bashrc 1.7 KB
20/bin/sh -c wget --quiet https://repo.anaconda.com/miniconda/Miniconda2-4.5.11-Linux-x86_64.sh173.21 MB
21ADD file ... in /etc/galaxy/reports_wsgi.ini 1.51 KB
22ADD file ... in /home/galaxy/ephemeris/sample_tool_list.yaml 463 B
23ADD dir:f11c9251382c95738059438a1239820b7a5e3036ca78fe34f89312934e6484c9 in /ansible/roles 47.67 KB
24ADD file ... in /ansible/provision.yml 221 B
25ADD file ... in /ansible/postgresql_provision.yml 351 B
26/bin/sh -c ansible-playbook /ansible/postgresql_provision.yml &&449.89 MB
27/bin/sh -c mkdir /shed_tools &&187.67 MB
28USER [galaxy]0 B
29WORKDIR /galaxy-central0 B
30ENV GALAXY_CONFIG_DATABASE_CONNECTION=postgresql://galaxy:galaxy@localhost:5432/galaxy?client_encoding=utf8 [email protected] GALAXY_CONFIG_MASTER_API_KEY=HSNiugRFvgT574F43jZ7N9F30 B
31ADD file ... in /etc/galaxy/web/welcome_image.png 49.55 KB
32ADD file ... in /etc/galaxy/web/welcome.html 1.07 KB
33/bin/sh -c ./scripts/common_startup.sh && 4.21 MB
34USER [root]0 B
35ADD file ... in /usr/local/bin/setup_postgresql.py 1.29 KB
36/bin/sh -c rm $PG_DATA_DIR_DEFAULT -rf7.06 MB
37ADD file ... in /home/galaxy/tool_sheds_conf.xml 357 B
38ADD file ... in /usr/bin/install-tools 787 B
39ADD file ... in /usr/bin/install-biojs 344 B
40/bin/sh -c chmod +x /usr/bin/install-tools6.22 KB
41/bin/sh -c echo "DISCARD_SESSION_KEYRING_ON_STARTUP=False" >228 B
42ENV GALAXY_CONFIG_INTEGRATED_TOOL_PANEL_CONFIG=/export/galaxy-central/integrated_tool_panel.xml0 B
43EXPOSE 21/tcp0 B
44EXPOSE 80/tcp0 B
45EXPOSE 443/tcp0 B
46EXPOSE 8800/tcp0 B
47EXPOSE 9002/tcp0 B
48VOLUME [/export/ /data/ /var/lib/docker]0 B
49ADD file ... in /usr/bin/install_db.sh 269 B
50/bin/sh -c chmod +x /usr/bin/install_db.sh376 B
51CMD ["/usr/bin/startup"]0 B
52MAINTAINER Matt Chambers, [email protected]0 B
53/bin/sh -c tail -n 2973 B
54ADD file ... in /galaxy-central/tools.yaml 1.66 KB
55/bin/sh -c install-tools $GALAXY_ROOT/tools.yaml &&2.04 GB
56ENV GALAXY_CONFIG_CONDA_AUTO_INSTALL=true0 B
57ADD file ... in /galaxy-central/tools.yaml 1.25 KB
58/bin/sh -c install-tools $GALAXY_ROOT/tools.yaml &&256.17 MB
59/bin/sh -c cp /tool_deps/_conda/pkgs/bcftools-1.4.1-0/bin/* /usr/bin2.17 MB
60COPY multi:ed7dbfcd7ea486e96e17ba11685591d0502e019b664f435cfe56170738c060cf in /tmp/ 14.3 KB
61COPY multi:32699a814021bf58b5dc95376c8f8e7feb622ee16407c9a4fc0900a064a3bc83 in /tmp/ 94.1 MB
62COPY multi:f6b805533531711b1e6feb09e0ab6107409ecd96a3cf003ae13615198e8ed935 in /usr/bin/ 2.01 KB
63/bin/sh -c chmod u+x /usr/bin/*.sh4.04 KB
64ENV GALAXY_LOG=galaxy_install.log0 B
65/bin/sh -c mv /etc/galaxy/job_conf.xml /etc/galaxy/job_conf.xml.bak662.26 KB
66/bin/sh -c stat $GALAXY_ROOT/../shed_tools/*0 B
67USER galaxy0 B
68ENV GALAXY_CONFIG_BRAND=Omicron ENABLE_TTS_INSTALL=True0 B
69WORKDIR /galaxy-central0 B
70USER root0 B
71COPY file:ac51ba823c7c9749750d21dcb2211d6b53a42adb9768c60985ae08d194f95af5 in /etc/cvmfs/keys/ 557 B
72COPY file:9549e08432861371ba60add2f9b698e9cec70609f2a0ed6389c412de7a780d8a in /etc/cvmfs/config.d/ 271 B
73COPY file:d2e3824700eda9b0ae0840f94590b2ee14fc7d1bf29ec6b692d44301e2111619 in /etc/cvmfs/ 270 B
74/bin/sh -c sed -i.bak 's/<\/tables>/19.64 KB
75VOLUME [/export/ /data/ /var/lib/docker]0 B
76EXPOSE :21 :80 :88000 B
77CMD ["/usr/bin/startup"]0 B
78MAINTAINER Matt Chambers, [email protected]0 B
79/bin/sh -c apt-key adv --keyserver23.09 MB
80ENV NONUSE=reports,slurmd,slurmctld SLURM_CONF=/opt/slurm/etc/slurm.conf GALAXY_CONFIG_ALLOW_USER_DATASET_PURGE=True0 B
81/bin/sh -c mkdir /src &&814.87 KB
82ADD file ... in /etc/galaxy/job_conf.xml 764 B
83ADD file ... in /usr/bin/ 450 B
84ENV DRMAA_LIBRARY_PATH=/usr/local/lib/libdrmaa.so0 B
85/bin/sh -c sed -i.bak "s/upload_store2.57 KB
86VOLUME [/export/ /data/ /var/lib/docker]0 B
87EXPOSE :21 :80 :80220 B
88CMD ["/usr/bin/startup"]0 B

Command

ADD file:6eca4ad395f3f9986f9edf8cc1cc454f7247e63f18bdd8bdb914537ef55b9c88 in /