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broadinstitute/gatk:4.2.4.1

Manifest digest

sha256:421d2fb2cc869249cef3f4d7a77289256d295b04ba623096228e0e5fd42939e9

OS/ARCH

linux/amd64

Compressed size

1.63 GB

Last pushed

over 4 years by lbergelson

Type

Image

Manifest digest

sha256:421d2fb2cc869249cef3f4d7a77289256d295b04ba623096228e0e5fd42939e9

Image Layers

Image Layers

1ADD file ... in / 0 B
2/bin/sh -c [ -z "$(apt-get0 B
3/bin/sh -c set -xe &&0 B
4/bin/sh -c mkdir -p /run/systemd0 B
5CMD ["/bin/bash"]0 B
6/bin/sh -c apt-get update &&0 B
7/bin/sh -c export CLOUD_SDK_REPO="cloud-sdk-$(lsb_release -c0 B
8ENV HOME=/root0 B
9WORKDIR /root0 B
10CMD ["bash"]0 B
11ENV JAVA_LIBRARY_PATH=/usr/lib/jni0 B
12ENV JAVA_HOME=/usr/lib/jvm/java-8-openjdk-amd64/0 B
13/bin/sh -c java -version0 B
14ENV DOWNLOAD_DIR=/downloads0 B
15ENV CONDA_URL=https://repo.continuum.io/miniconda/Miniconda3-4.7.12.1-Linux-x86_64.sh0 B
16ENV CONDA_MD5== 81c773ff87af5cfac79ab862942ab6b30 B
17ENV CONDA_PATH=/opt/miniconda0 B
18/bin/sh -c mkdir $DOWNLOAD_DIR &&0 B
19/bin/sh -c rm -rf /var/lib/apt/lists/*0 B
200 B
21WORKDIR /gatk0 B
22COPY /gatk/unzippedJar . # buildkit0 B
23RUN /bin/sh -c ln -s0 B
24RUN /bin/sh -c ln -s0 B
25RUN /bin/sh -c ln -s0 B
26WORKDIR /root0 B
27RUN /bin/sh -c java -jar0 B
28RUN /bin/sh -c mkdir /gatkCloneMountPoint0 B
29RUN /bin/sh -c mkdir /jars0 B
30RUN /bin/sh -c mkdir .gradle0 B
31WORKDIR /gatk0 B
32ENV CI=true0 B
33RUN /bin/sh -c echo "source0 B
34WORKDIR /root0 B
35RUN /bin/sh -c cp -r0 B
36RUN /bin/sh -c cp -r0 B
37ENV CLASSPATH=/gatk/gatk.jar:0 B
38WORKDIR /gatk0 B
39RUN /bin/sh -c chmod -R0 B
40ENV PATH=/opt/miniconda/envs/gatk/bin:/opt/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
41RUN /bin/sh -c conda env0 B
42CMD ["bash" "--init-file" "/gatk/gatkenv.rc"]0 B
43ENV PATH=/gatk:/opt/miniconda/envs/gatk/bin:/opt/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
441.63 GB

Command

ADD file:91a750fb184711fde03c9172f41e8a907ccbb1bfb904c2c3f4ef595fcddbc3a9 in /