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bids/baracus:latest

Manifest digest

sha256:8e42305ab7321fcdb468c22a87b5a9b248866a5821e64721200f927c2019dcb4

OS/ARCH

linux/amd64

Compressed size

3.07 GB

Last pushed

almost 7 years by bidsappsdev

Type

Image

Manifest digest

sha256:8e42305ab7321fcdb468c22a87b5a9b248866a5821e64721200f927c2019dcb4

Image Layers

Image Layers

1ADD file ... in / 63.99 MB
2/bin/sh -c set -xe &&70.92 KB
3/bin/sh -c rm -rf /var/lib/apt/lists/*357 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'674 B
5/bin/sh -c mkdir -p /run/systemd163 B
6CMD ["/bin/bash"]0 B
7/bin/sh -c apt-get update &&18.9 MB
8/bin/sh -c npm install -g9.62 MB
9/bin/sh -c apt-get update 23.39 MB
10/bin/sh -c wget -qO- https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0/freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.tar.gz2 GB
11/bin/sh -c /bin/bash -c 'touch149 B
12ENV OS=Linux0 B
13ENV FS_OVERRIDE=00 B
14ENV FIX_VERTEX_AREA=0 B
15ENV SUBJECTS_DIR=/opt/freesurfer/subjects0 B
16ENV FSF_OUTPUT_FORMAT=nii.gz0 B
17ENV MNI_DIR=/opt/freesurfer/mni0 B
18ENV LOCAL_DIR=/opt/freesurfer/local0 B
19ENV FREESURFER_HOME=/opt/freesurfer0 B
20ENV FSFAST_HOME=/opt/freesurfer/fsfast0 B
21ENV MINC_BIN_DIR=/opt/freesurfer/mni/bin0 B
22ENV MINC_LIB_DIR=/opt/freesurfer/mni/lib0 B
23ENV MNI_DATAPATH=/opt/freesurfer/mni/data0 B
24ENV FMRI_ANALYSIS_DIR=/opt/freesurfer/fsfast0 B
25ENV PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.50 B
26ENV MNI_PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.50 B
27ENV PATH=/opt/freesurfer/bin:/opt/freesurfer/fsfast/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
28/bin/sh -c sudo apt-get update22.87 MB
29/bin/sh -c sudo apt-get update22.34 MB
30/bin/sh -c sudo apt-get update22.67 MB
31/bin/sh -c sudo apt-get update26.71 MB
32/bin/sh -c 2to3-3.4 -w $FREESURFER_HOME/bin/aparcstats2table213.05 KB
33/bin/sh -c 2to3-3.4 -w $FREESURFER_HOME/bin/asegstats2table7.41 KB
34/bin/sh -c 2to3-3.4 -w $FREESURFER_HOME/bin/*.py11.44 KB
35/bin/sh -c mkdir /code93 B
36/bin/sh -c wget -qO models.zip342.41 MB
37/bin/sh -c wget https://github.com/bids-apps/freesurfer/archive/v6.0.0-5.tar.gz &&13.12 KB
38/bin/sh -c sed -e "s/-parallel5.14 KB
39/bin/sh -c echo "FS5.3_BIDSAPPv6.0.0-5" >159 B
40ENV PATH=/code:/opt/freesurfer/bin:/opt/freesurfer/fsfast/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
41/bin/sh -c echo 'export PATH=/usr/local/anaconda:$PATH'536.46 MB
42ENV PATH=/usr/local/anaconda/bin:/code:/opt/freesurfer/bin:/opt/freesurfer/fsfast/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
43ENV LANG=C.UTF-80 B
44ENV LC_ALL=C.UTF-80 B
45/bin/sh -c pip install nibabel==2.2.09.89 MB
46/bin/sh -c pip install pybids==0.3202.35 KB
47/bin/sh -c pip install duecredit==0.6.3892.45 KB
48/bin/sh -c pip install scikit-learn==0.17.190 B
49COPY dir:2cd6a6a0395749d7d0a9c4c95d4f24608f3779ccf7de51a63d4bf746705326e1 in /code/ 105.45 KB
50/bin/sh -c cd /code &&24.84 KB
51ENTRYPOINT ["run_brain_age_bids.py"]0 B

Command

ADD file:a642bdc2d8d6e4484e4419fc938e24b03454e36f389233f2ce77fc04722da900 in /